Cattle
Bos taurus
A large domesticated mammal, important for agricultural research and comparative genomics.
Dataset Statistics
Overview
Cattle (Bos taurus) is an important large animal model for agricultural genomics, developmental biology, and comparative mammalian studies. As a major livestock species, cattle serves as a valuable model for understanding mammalian development, reproductive biology, and the genetic basis of economically important traits. This portal provides genomic resources for studying complex traits, embryonic development, and functional genomics in this agriculturally significant mammalian species.
Research Areas Covered
- Developmental Biology: Embryonic development, pluripotency regulation
- Agricultural Genomics: Complex trait analysis, livestock genetics
- Comparative Genomics: Mammalian functional annotation, cross-species analysis
Reference Genome and Annotation
| Item | Value |
|---|---|
| Genome assembly | ARS-UCD1.3 |
| Gene annotation | Ensembl 111 |
Data Sources
Bulk data
| StudyID | Year | Journal | Title | PMID | Sample |
|---|---|---|---|---|---|
| 2021_NatCommun_Zhou | 2021 | Nat Commun | Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research | 33758196 | Adipose, cerebellum, cerebral cortex, hypothalamus, liver, lung, skeletal muscle and spleen |
| 2020_GenomeRes_Liu | 2020 | Genome Res | Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle | 32424068 | Mammary tissue |
| 2018_BiolOpen_Dinnyes | 2018 | Biol Open | Mammalian embryo comparison identifies novel pluripotency genes associated with the naïve or primed state | 30026265 | Embryo E7 ICM, E14 ERSE and E17 APE |
Genome Browser
Interactive genomic data visualization and exploration using JBrowse 2
Loading JBrowse 2...
Please wait while we load the genome browser
Gene Browser
Interactive gene expression analysis and multi-omics data exploration using Dash
BLAST Search
Find similar sequences in the Cattle database using SequenceServer